One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.131855_4c8Buk/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.131855_4c8Buk/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m1_shift9 ; 167 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_5-8nt_m1_shift9 (oligos_5-8nt_m1)                         
; oligos_5-8nt_m1; m=0 (reference); ncol1=13; shift=9; ncol=22; ---------waAAAGTCAAAww
; Alignment reference
a	0	0	0	0	0	0	0	0	0	133	160	337	409	428	39	22	20	390	408	375	148	135
c	0	0	0	0	0	0	0	0	0	80	103	45	8	9	24	15	392	21	5	18	68	89
g	0	0	0	0	0	0	0	0	0	79	92	32	10	1	353	13	21	9	10	25	103	91
t	0	0	0	0	0	0	0	0	0	152	89	30	17	6	28	394	11	24	21	26	125	129
WRKY59_MA1304.1_JASPAR_shift9 (WRKY59:MA1304.1:JASPAR) 0.916 0.846 6.359 0.947 0.967 3 1 29 3 3 7.800 1 
; oligos_5-8nt_m1 versus WRKY59_MA1304.1_JASPAR (WRKY59:MA1304.1:JASPAR); m=1/166; ncol2=12; w=12; offset=0; strand=D; shift=9; score=    7.8; ---------mawwAGTCAAmr-
; cor=0.916; Ncor=0.846; logoDP=6.359; NsEucl=0.947; NSW=0.967; rcor=3; rNcor=1; rlogoDP=29; rNsEucl=3; rNSW=3; rank_mean=7.800; match_rank=1
a	0	0	0	0	0	0	0	0	0	56	109	97	103	130	0	0	0	173	173	93	46	0
c	0	0	0	0	0	0	0	0	0	48	12	15	18	0	0	2	173	0	0	62	38	0
g	0	0	0	0	0	0	0	0	0	26	25	16	8	39	173	0	0	0	0	6	58	0
t	0	0	0	0	0	0	0	0	0	43	27	45	44	4	0	171	0	0	0	12	31	0
WRKY17_MA1299.1_JASPAR_shift9 (WRKY17:MA1299.1:JASPAR) 0.873 0.810 7.729 0.935 0.945 22 4 6 10 18 12.000 6 
; oligos_5-8nt_m1 versus WRKY17_MA1299.1_JASPAR (WRKY17:MA1299.1:JASPAR); m=6/166; ncol2=14; w=13; offset=0; strand=D; shift=9; score=     12; ---------aaAAAGTCAACgv
; cor=0.873; Ncor=0.810; logoDP=7.729; NsEucl=0.935; NSW=0.945; rcor=22; rNcor=4; rlogoDP=6; rNsEucl=10; rNSW=18; rank_mean=12.000; match_rank=6
a	0	0	0	0	0	0	0	0	0	57	67	94	117	125	0	0	0	125	127	20	29	32
c	0	0	0	0	0	0	0	0	0	25	24	9	0	0	0	5	127	0	0	97	9	38
g	0	0	0	0	0	0	0	0	0	23	14	18	6	1	127	1	0	2	0	8	78	32
t	0	0	0	0	0	0	0	0	0	22	22	6	4	1	0	121	0	0	0	2	11	25
WRKY17.ampDAP_M0837_AthalianaCistrome_shift9 (WRKY17.ampDAP:M0837:AthalianaCistrome) 0.833 0.833 8.362 0.921 0.918 42 3 1 37 57 28.000 18 
; oligos_5-8nt_m1 versus WRKY17.ampDAP_M0837_AthalianaCistrome (WRKY17.ampDAP:M0837:AthalianaCistrome); m=18/166; ncol2=13; w=13; offset=0; strand=D; shift=9; score=     28; ---------aaAAAGTCAACGm
; cor=0.833; Ncor=0.833; logoDP=8.362; NsEucl=0.921; NSW=0.918; rcor=42; rNcor=3; rlogoDP=1; rNsEucl=37; rNSW=57; rank_mean=28.000; match_rank=18
a	0	0	0	0	0	0	0	0	0	172	246	353	383	386	0	0	0	389	388	29	3	110
c	0	0	0	0	0	0	0	0	0	69	66	3	0	0	0	20	389	0	0	359	35	118
g	0	0	0	0	0	0	0	0	0	62	44	22	1	3	389	0	0	0	0	0	305	80
t	0	0	0	0	0	0	0	0	0	86	33	11	5	0	0	369	0	0	1	1	46	81
WRKY45.DAP_M0805_AthalianaCistrome_rc_shift9 (WRKY45.DAP:M0805:AthalianaCistrome_rc) 0.911 0.841 0.497 0.939 0.956 5 2 149 7 8 34.200 24 
; oligos_5-8nt_m1 versus WRKY45.DAP_M0805_AthalianaCistrome_rc (WRKY45.DAP:M0805:AthalianaCistrome_rc); m=24/166; ncol2=12; w=12; offset=0; strand=R; shift=9; score=   34.2; ---------aaAAAGTCAAmg-
; cor=0.911; Ncor=0.841; logoDP=0.497; NsEucl=0.939; NSW=0.956; rcor=5; rNcor=2; rlogoDP=149; rNsEucl=7; rNSW=8; rank_mean=34.200; match_rank=24
a	0	0	0	0	0	0	0	0	0	272	391	533	558	583	0	0	0	600	597	182	138	0
c	0	0	0	0	0	0	0	0	0	130	82	15	8	0	0	1	599	0	0	383	74	0
g	0	0	0	0	0	0	0	0	0	92	69	25	8	16	600	0	1	0	2	1	297	0
t	0	0	0	0	0	0	0	0	0	106	58	27	26	1	0	599	0	0	1	34	91	0